Many of the software codes available for download are intended to be executed from command line shell.
S-core network peeling algorithms:
- Publication: M. Eidsaa and E. Almaas. Phys. Rev. E. 88, 062819 (2013). [Link]
- Forthcoming shortly.
Differential co-expression network analyses:
- Publication: A. Voigt, K. Nowick, and E. Almaas. PLoS Comput Biol (2017).
- Network data sets:
- List of genes present in the CSD network (12 kB): [CSD_gene_list.txt]
- Complete list of genes with gene-expression data (117 kB): [complete_gene_list.txt]
- Link-list for CSD network (68 kB): [CSD_network.txt]
- Complete list of correlations, variance of the correlations, and CSD-scores (11 GB): [CSD_complete_data.txt.gz]
- Software programs used in the analysis in this paper is available on GitHub: [CSD_git]
- A general purpose C++ code for CSD-calculation is available on GitHub: [CSD-CS_git]