Tools & Downloads

On these pages we make software and datasets available for download, and we kindly ask that our work is cited — journal references are given together with each resource. Our software is also available on GitHub: github.com/AlmaasLab.

Complex network analysis

Algorithms and software for network analysis.

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Metabolic modeling

Software for the analysis of genome-scale metabolic models, and manually curated genome-scale reconstructions.

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Genetic circuits

Self-consistent computational models of genetic circuits.

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