On these pages, we make software and datasets available for download, and we kindly ask that our work is cited. The journal references are given together with the specific resources.

We have software available at GitHub: https://github.com/AlmaasLab

Additionally, we have specific packages available within the following topics:

• [Complex network analysis]

  • Algorithms and software for network analysis

• [Metabolic modeling]

  • Software for the analysis of genome-scale metabolic models
  • Manually curated genome-scale metabolic reconstructions

• [Genetic circuits]

  • Self-consistent computational models of genetic circuits