Many of the software codes available for download are intended to be executed from command line shell.
  • S-core network peeling algorithms:
    • Publication: M. Eidsaa and E. Almaas. Phys. Rev. E. 88, 062819 (2013). [Link]
    • Forthcoming shortly.
    • Publication: M. Eidsaa, L. Stubbs and E. Almaas. Submitted.
    • Network data sets and s-core+ algorithm:
      • README file, describing network and code (3kB): [README.txt]
      • The four gene co-expression wTO networks (723 MB): [networks.tgz]
      • Perl script for s-core+ method (5kB): [s-core_plus.pl]
  • Differential co-expression network analyses:
    • Publication: A. Voigt, K. Nowick, and E. Almaas. PLoS Comput Biol (2017).
    • Network data sets:
    • A general purpose C++ code for CSD-calculation is available on GitHub: [CSD-CS_git]